SRX080335
GSM749672: Stam Jurkat Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Jurkat
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
Jurkat
biomaterial_provider
ATCC
cell
Jurkat
cell organism
Human
cell description
T lymphoblastoid derived from an acute T cell leukemia, "The Jurkat cell line was established from the peripheral blood of a 14 year old boy by Schneider et al., and was originally designated JM." - ATCC. (PMID: 68013)
cell karyotype
cancer
cell lineage
mesoderm
cell sex
M
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749672: Stam_Jurkat_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22852691
Reads aligned (%)
97.4
Duplicates removed (%)
1.9
Number of peaks
845 (qval < 1E-05)

hg19

Number of total reads
22852691
Reads aligned (%)
96.3
Duplicates removed (%)
3.7
Number of peaks
992 (qval < 1E-05)

Base call quality data from DBCLS SRA