SRX080334
GSM749671: Stam AG09319 Input 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
AG09319
Tissue
gingival
Description
gum tissue fibroblasts from apparently heathly 24 year old

Attributes by original data submitter

Sample

source_name
AG09319
biomaterial_provider
AG09319
cell
AG09319
cell organism
Human
cell description
gum tissue fibroblasts from apparently heathly 24 year old
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
antibody
Input
replicate
1

Sequenced DNA Library

library_name
GSM749671: Stam_AG09319_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28146638
Reads aligned (%)
98.6
Duplicates removed (%)
1.9
Number of peaks
766 (qval < 1E-05)

hg19

Number of total reads
28146638
Reads aligned (%)
97.4
Duplicates removed (%)
3.3
Number of peaks
992 (qval < 1E-05)

Base call quality data from DBCLS SRA