Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
GM12875
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed

Attributes by original data submitter

Sample

source_name
GM12875
biomaterial_provider
GM12875
cell
GM12875
cell organism
Human
cell description
B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, Treatment: Epstein-Barr Virus transformed
cell karyotype
unknown
cell lineage
mesoderm
cell sex
F
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
2

Sequenced DNA Library

library_name
GSM749670: Stam_GM12875_CTCF_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
14649260
Reads aligned (%)
55.9
Duplicates removed (%)
24.1
Number of peaks
22439 (qval < 1E-05)

hg38

Number of total reads
14649260
Reads aligned (%)
57.0
Duplicates removed (%)
23.2
Number of peaks
21609 (qval < 1E-05)

Base call quality data from DBCLS SRA