Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

cell

GM12878

cell organism

Human

cell description

lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

antibody

Input

replicate

1

Sequenced DNA Library

library_name

GSM749669: Stam_GM12878_Input_1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

16990693

Reads aligned (%)

97.2

Duplicates removed (%)

3.5

Number of peaks

686 (qval < 1E-05)

hg19

Number of total reads

16990693

Reads aligned (%)

96.2

Duplicates removed (%)

4.9

Number of peaks

1003 (qval < 1E-05)