SRX080329
GSM749666: Stam AoAF CTCF 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Cardiovascular
Cell type
AoAF
Tissue
blood vessel
Lineage
mesoderm
Description
aortic adventitial fibroblast cells

Attributes by original data submitter

Sample

source_name
AoAF
biomaterial_provider
Lonza
cell
AoAF
cell organism
Human
cell description
aortic adventitial fibroblast cells
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
1

Sequenced DNA Library

library_name
GSM749666: Stam_AoAF_CTCF_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
11298125
Reads aligned (%)
95.3
Duplicates removed (%)
9.2
Number of peaks
35840 (qval < 1E-05)

hg38

Number of total reads
11298125
Reads aligned (%)
95.9
Duplicates removed (%)
8.5
Number of peaks
35829 (qval < 1E-05)

Base call quality data from DBCLS SRA