Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AFF4

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
HCT-116
cell type
colon cancer cell line
cell passage
4-15
chip antibody
Lin et al. 2010 (Mol. Cell)

Sequenced DNA Library

library_name
GSM749823: AFF4_serum_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
37913883
Reads aligned (%)
29.1
Duplicates removed (%)
68.1
Number of peaks
680 (qval < 1E-05)

hg38

Number of total reads
37913883
Reads aligned (%)
30.5
Duplicates removed (%)
66.8
Number of peaks
594 (qval < 1E-05)

Base call quality data from DBCLS SRA