SRX080253
GSM749818: ELL2 starved ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AFF4

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
HCT-116
cell type
colon cancer cell line
cell passage
4-15
chip antibody
Lin et al. 2010 (Mol. Cell)

Sequenced DNA Library

library_name
GSM749818: ELL2_starved_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
36999499
Reads aligned (%)
84.2
Duplicates removed (%)
57.1
Number of peaks
1431 (qval < 1E-05)

hg38

Number of total reads
36999499
Reads aligned (%)
85.2
Duplicates removed (%)
54.7
Number of peaks
1255 (qval < 1E-05)

Base call quality data from DBCLS SRA