Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Epidermis
Cell type
NHEK
Tissue
skin
Lineage
ectoderm
Description
epidermal keratinocytes

Attributes by original data submitter

Sample

source_name
NHEK_cMYC
cell line
NHEK
cell type
normal epidermal keratinocytes
chip_antibody_provider
Santa Cruz
chip_antibody_catalog
sc-764X
chip_antibody_lot
C1309

Sequenced DNA Library

library_name
GSM748557: NHEK_cMYC_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
28295288
Reads aligned (%)
22.2
Duplicates removed (%)
50.3
Number of peaks
2884 (qval < 1E-05)

hg38

Number of total reads
28295288
Reads aligned (%)
22.7
Duplicates removed (%)
49.4
Number of peaks
2920 (qval < 1E-05)

Base call quality data from DBCLS SRA