SRX080159
GSM748555: K562 PolII REP2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562_PolII
cell line
K562
cell type
chronic myeloid leukemia
chip_antibody_provider
Covance
chip_antibody_catalog
MMS-126R

Sequenced DNA Library

library_name
GSM748555: K562_PolII_REP2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28835681
Reads aligned (%)
90.2
Duplicates removed (%)
37.0
Number of peaks
23356 (qval < 1E-05)

hg19

Number of total reads
28835681
Reads aligned (%)
89.7
Duplicates removed (%)
37.5
Number of peaks
23402 (qval < 1E-05)

Base call quality data from DBCLS SRA