SRX080152
GSM748548: HUVEC PolII REP1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HUVEC_PolII
cell line
HUVEC
cell type
umbilical vein endothelial cells
chip_antibody_provider
Covance
chip_antibody_catalog
MMS-126R
chip_antibody_lot
H107

Sequenced DNA Library

library_name
GSM748548: HUVEC_PolII_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14129606
Reads aligned (%)
92.5
Duplicates removed (%)
58.3
Number of peaks
14778 (qval < 1E-05)

hg19

Number of total reads
14129606
Reads aligned (%)
91.2
Duplicates removed (%)
58.4
Number of peaks
14776 (qval < 1E-05)

Base call quality data from DBCLS SRA