SRX080150
GSM748546: HepG2 INPUT

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2_INPUT
cell line
HepG2
cell type
liver carcinoma cells

Sequenced DNA Library

library_name
GSM748546: HepG2_INPUT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12326775
Reads aligned (%)
94.1
Duplicates removed (%)
25.7
Number of peaks
234 (qval < 1E-05)

hg19

Number of total reads
12326775
Reads aligned (%)
93.2
Duplicates removed (%)
26.6
Number of peaks
481 (qval < 1E-05)

Base call quality data from DBCLS SRA