SRX080146
GSM748542: HepG2 cMYC REP3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2_cMYC
cell line
HepG2
cell type
liver carcinoma cells
chip_antibody_provider
Santa Cruz
chip_antibody_catalog
sc-764X
chip_antibody_lot
H107

Sequenced DNA Library

library_name
GSM748542: HepG2_cMYC_REP3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7267488
Reads aligned (%)
94.0
Duplicates removed (%)
2.7
Number of peaks
3000 (qval < 1E-05)

hg19

Number of total reads
7267488
Reads aligned (%)
93.3
Duplicates removed (%)
3.3
Number of peaks
3110 (qval < 1E-05)

Base call quality data from DBCLS SRA