Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2_CTCF
cell line
HepG2
cell type
liver carcinoma cells
chip_antibody_provider
Millipore
chip_antibody_catalog
07-729
chip_antibody_lot
DAM1421462

Sequenced DNA Library

library_name
GSM748539: HepG2_CTCF_REP2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
7393740
Reads aligned (%)
82.7
Duplicates removed (%)
9.8
Number of peaks
47482 (qval < 1E-05)

hg38

Number of total reads
7393740
Reads aligned (%)
83.7
Duplicates removed (%)
9.3
Number of peaks
47623 (qval < 1E-05)

Base call quality data from DBCLS SRA