Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HelaS3_cMYC
cell line
HelaS3
cell type
cervical carcinoma
chip_antibody_provider
Santa Cruz
chip_antibody_catalog
sc-764X
chip_antibody_lot
H107

Sequenced DNA Library

library_name
GSM748534: HelaS3_cMYC_REP2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
7540244
Reads aligned (%)
88.5
Duplicates removed (%)
5.1
Number of peaks
1405 (qval < 1E-05)

hg38

Number of total reads
7540244
Reads aligned (%)
90.2
Duplicates removed (%)
4.1
Number of peaks
1336 (qval < 1E-05)

Base call quality data from DBCLS SRA