Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1_ES_cMYC
cell line
H1_ES
cell type
embryonic stem cells
chip_antibody_provider
Santa Cruz
chip_antibody_catalog
sc-764X
chip_antibody_lot
C1309

Sequenced DNA Library

library_name
GSM748531: H1_ES_cMYC_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
29343462
Reads aligned (%)
30.5
Duplicates removed (%)
52.6
Number of peaks
739 (qval < 1E-05)

hg38

Number of total reads
29343462
Reads aligned (%)
31.1
Duplicates removed (%)
52.4
Number of peaks
899 (qval < 1E-05)

Base call quality data from DBCLS SRA