Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878_PolII
biomaterial_provider
GM12878
cell line
GM12878
cell type
lymphoblastoid cells
chip_antibody_provider
Covance
chip_antibody_catalog
MMS-126R

Sequenced DNA Library

library_name
GSM748529: GM12878_PolII_REP2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
17810183
Reads aligned (%)
96.5
Duplicates removed (%)
10.1
Number of peaks
16465 (qval < 1E-05)

hg19

Number of total reads
17810183
Reads aligned (%)
95.9
Duplicates removed (%)
10.3
Number of peaks
17009 (qval < 1E-05)

Base call quality data from DBCLS SRA