Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878_cMYC
biomaterial_provider
GM12878
cell line
GM12878
cell type
lymphoblastoid cells
chip_antibody_provider
Santa Cruz
chip_antibody_catalog
sc-764X
chip_antibody_lot
H107

Sequenced DNA Library

library_name
GSM748526: GM12878_cMYC_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
14529760
Reads aligned (%)
73.2
Duplicates removed (%)
17.6
Number of peaks
1531 (qval < 1E-05)

hg38

Number of total reads
14529760
Reads aligned (%)
75.8
Duplicates removed (%)
15.8
Number of peaks
1424 (qval < 1E-05)

Base call quality data from DBCLS SRA