SRX080122
GSM748521: HUVEC FAIRE REP2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
umbilical vein endothelial cells
cell line
HUVEC
cell type
umbilical vein endothelial cells

Sequenced DNA Library

library_name
GSM748521: HUVEC_FAIRE_REP2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48985967
Reads aligned (%)
95.8
Duplicates removed (%)
12.9
Number of peaks
1727 (qval < 1E-05)

hg19

Number of total reads
48985967
Reads aligned (%)
94.7
Duplicates removed (%)
15.2
Number of peaks
1929 (qval < 1E-05)

Base call quality data from DBCLS SRA