SRX080118
GSM748517: HepG2 FAIRE REP1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
liver carcinoma cells
cell line
HepG2
cell type
liver carcinoma cells

Sequenced DNA Library

library_name
GSM748517: HepG2_FAIRE_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
65808910
Reads aligned (%)
97.6
Duplicates removed (%)
4.9
Number of peaks
1254 (qval < 1E-05)

hg19

Number of total reads
65808910
Reads aligned (%)
96.5
Duplicates removed (%)
6.4
Number of peaks
1344 (qval < 1E-05)

Base call quality data from DBCLS SRA