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Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: GFP
wikigenes
PDBj
CellType: Young adult
ATCC
MeSH
RIKEN BRC
SRX080074
GSM749385: Pmex-5 LIN-35 YL468 10 18 10 yAd rep2 GFP CATT
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
GFP
Cell type
Cell type Class
Adult
Cell type
Young adult
NA
NA
Attributes by original data submitter
Sample
source_name
Pmex-5 LIN-35:GFP:FLAG whole animal
strain
YL468
Stage
Young adult
chip antibody
GFP
Sequenced DNA Library
library_name
GSM749385: Pmex-5_LIN-35_YL468_10_18_10_yAd_rep2_GFP_CATT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
3689890
Reads aligned (%)
20.4
Duplicates removed (%)
14.5
Number of peaks
169 (qval < 1E-05)
ce10
Number of total reads
3689890
Reads aligned (%)
20.4
Duplicates removed (%)
14.5
Number of peaks
167 (qval < 1E-05)
Base call quality data from
DBCLS SRA