SRX080059
GSM749370: Ppie-1 EFL-1 YL445 3-25-10 Ad rep2 GFP ACGT

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Adult
Cell type
Young adult
NA
NA

Attributes by original data submitter

Sample

source_name
Ppie-1 EFL-1:GFP:FLAG whole animal
strain
YL445
Stage
Young adult
chip antibody
GFP

Sequenced DNA Library

library_name
GSM749370: Ppie-1_EFL-1_YL445_3-25-10_Ad_rep2_GFP_ACGT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
3638904
Reads aligned (%)
60.8
Duplicates removed (%)
13.6
Number of peaks
1246 (qval < 1E-05)

ce10

Number of total reads
3638904
Reads aligned (%)
60.8
Duplicates removed (%)
13.6
Number of peaks
1242 (qval < 1E-05)

Base call quality data from DBCLS SRA