Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H4K20me3
wikigenes
PDBj
CellType: NB-4
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX080050
GSM749527: H4K20me3 untreated NB4 ChIPseq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H4K20me3
Cell type
Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia
Attributes by original data submitter
Sample
source_name
NB4 cells (leukemic), untreated, H4K20me3 ChIP-Seq
cell line
NB4
cell type
leukemic cells
treatment
none
chip antibody
anti-H4K20me3
antibody vendor
Upstate
antibody lot
24475
Sequenced DNA Library
library_name
GSM749527: H4K20me3_untreated_NB4_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
12057297
Reads aligned (%)
93.2
Duplicates removed (%)
12.6
Number of peaks
7527 (qval < 1E-05)
hg19
Number of total reads
12057297
Reads aligned (%)
91.8
Duplicates removed (%)
14.1
Number of peaks
7320 (qval < 1E-05)
Base call quality data from
DBCLS SRA