SRX080047
GSM749524: p300 untreated NB4 ChIPseq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB4 cells (leukemic), untreated, p300 ChIP-Seq
cell line
NB4
cell type
leukemic cells
treatment
none
chip antibody
anti-p300
antibody vendor
Santa Cruz Biotechnology
antibody lot
B2511

Sequenced DNA Library

library_name
GSM749524: p300_untreated_NB4_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
24741387
Reads aligned (%)
57.4
Duplicates removed (%)
39.0
Number of peaks
7292 (qval < 1E-05)

hg38

Number of total reads
24741387
Reads aligned (%)
59.0
Duplicates removed (%)
37.8
Number of peaks
7147 (qval < 1E-05)

Base call quality data from DBCLS SRA