SRX080046
GSM749523: H2A.Zac untreated NB4 ChIPseq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.Zac

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB4 cells (leukemic), untreated, H2A.Zac ChIP-Seq
cell line
NB4
cell type
leukemic cells
treatment
none
chip antibody
anti-H2A.Zac
antibody vendor
Abcam
antibody lot
659355

Sequenced DNA Library

library_name
GSM749523: H2A.Zac_untreated_NB4_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20770867
Reads aligned (%)
98.1
Duplicates removed (%)
45.4
Number of peaks
34517 (qval < 1E-05)

hg19

Number of total reads
20770867
Reads aligned (%)
97.6
Duplicates removed (%)
46.3
Number of peaks
34365 (qval < 1E-05)

Base call quality data from DBCLS SRA