SRX080037
GSM749514: Hpall untreated first NAseq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB4 cells (leukemic), untreated, HpaII NA-Seq
cell line
NB4
cell type
leukemic cells
treatment
none
restriction enzyme
HpaII (R0171M)

Sequenced DNA Library

library_name
GSM749514: Hpall_untreated_first_NAseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12885955
Reads aligned (%)
87.5
Duplicates removed (%)
36.9
Number of peaks
67 (qval < 1E-05)

hg19

Number of total reads
12885955
Reads aligned (%)
87.0
Duplicates removed (%)
37.1
Number of peaks
78 (qval < 1E-05)

Base call quality data from DBCLS SRA