SRX079863
GSM746557: GATA2 G1E ChIPSeq rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Gata2

Cell type

Cell type Class
Blood
Cell type
G1E
Tissue
Blood
Lineage
cellLine
Description
Gata1- erythroid progenitor

Attributes by original data submitter

Sample

source_name
G1E cells
strain
129
genotype/variation
Gata1-null
developmental stage/cell type
Erythroid committed, immature progenitor murine cell line
chip antibody target
GATA2
chip_antibody_provider
Santa Cruz Biotechnology
chip_antibody_catalog
SC-9008
chip_antibody_lot
J2108

Sequenced DNA Library

library_name
GSM746557: GATA2_G1E_ChIPSeq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16192739
Reads aligned (%)
96.1
Duplicates removed (%)
5.5
Number of peaks
484 (qval < 1E-05)

mm9

Number of total reads
16192739
Reads aligned (%)
96.0
Duplicates removed (%)
5.7
Number of peaks
564 (qval < 1E-05)

Base call quality data from DBCLS SRA