SRX079860
GSM746554: ChIPinput G1E Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
G1E
Tissue
Blood
Lineage
cellLine
Description
Gata1- erythroid progenitor

Attributes by original data submitter

Sample

source_name
G1E cells
strain
129
genotype/variation
Gata1-null
developmental stage/cell type
Erythroid committed, immature progenitor murine cell line
chip antibody target
N/A

Sequenced DNA Library

library_name
GSM746554: ChIPinput_G1E_Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16009205
Reads aligned (%)
96.7
Duplicates removed (%)
7.8
Number of peaks
421 (qval < 1E-05)

mm9

Number of total reads
16009205
Reads aligned (%)
96.5
Duplicates removed (%)
7.9
Number of peaks
511 (qval < 1E-05)

Base call quality data from DBCLS SRA