Antigen

Antigen Class

TFs and others

Antigen

NFKBIA

Cell type

Cell type Class

Epidermis

Cell type

Keratinocytes

MeSH Description

Epidermal cells which synthesize keratin and undergo characteristic changes as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell.

Sample

source_name

primary epidermal keratinocytes; normal, human neonatal foreskin (origin: ATCCA® ref. PCS-200-010)

cell type

primary epidermal keratinocyte

cell differentiation protocol

normal undifferentiated keratinocytes

chip antibody

anti-IkappaBalpha

chip antibody vendor

Upstate

Sequenced DNA Library

library_name

GSM744581: IkBa_ChIPSeq

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

36806366

Reads aligned (%)

22.3

Duplicates removed (%)

38.3

Number of peaks

287 (qval < 1E-05)

hg19

Number of total reads

36806366

Reads aligned (%)

22.1

Duplicates removed (%)

39.1

Number of peaks

314 (qval < 1E-05)