Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NFKBIA

Cell type

Cell type Class
Epidermis
Cell type
Keratinocytes
MeSH Description
Epidermal cells which synthesize keratin and undergo characteristic changes as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell.

Attributes by original data submitter

Sample

source_name
primary epidermal keratinocytes; normal, human neonatal foreskin (origin: ATCCA® ref. PCS-200-010)
cell type
primary epidermal keratinocyte
cell differentiation protocol
normal undifferentiated keratinocytes
chip antibody
anti-IkappaBalpha
chip antibody vendor
Upstate

Sequenced DNA Library

library_name
GSM744581: IkBa_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
36806366
Reads aligned (%)
13.4
Duplicates removed (%)
39.1
Number of peaks
314 (qval < 1E-05)

hg38

Number of total reads
36806366
Reads aligned (%)
13.7
Duplicates removed (%)
38.3
Number of peaks
287 (qval < 1E-05)

Base call quality data from DBCLS SRA