Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CDX2

Cell type

Cell type Class
Digestive tract
Cell type
COLO 320
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
colorectal cancer cells
cell line
COLO-320
chip antibody
CDX2 Ab
chip antibody manufacturer
Cell Signaling

Sequenced DNA Library

library_name
GSM743039: CDX2 ChIP-seq Cell Signaling Ab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
21758595
Reads aligned (%)
29.9
Duplicates removed (%)
68.1
Number of peaks
2682 (qval < 1E-05)

hg38

Number of total reads
21758595
Reads aligned (%)
31.5
Duplicates removed (%)
66.7
Number of peaks
2656 (qval < 1E-05)

Base call quality data from DBCLS SRA