SRX077858
GSM743038: Input DNA

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
COLO 320
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
colorectal cancer cells
cell line
COLO-320
chip antibody
none

Sequenced DNA Library

library_name
GSM743038: Input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15952945
Reads aligned (%)
98.8
Duplicates removed (%)
25.0
Number of peaks
333 (qval < 1E-05)

hg19

Number of total reads
15952945
Reads aligned (%)
98.1
Duplicates removed (%)
26.4
Number of peaks
655 (qval < 1E-05)

Base call quality data from DBCLS SRA