Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Gonad
Cell type
Spermatids
MeSH Description
Male germ cells derived from the haploid secondary SPERMATOCYTES. Without further division, spermatids undergo structural changes and give rise to SPERMATOZOA.

Attributes by original data submitter

Sample

source_name
input DNA
strain
BALB/c
age
30 days old
organ
testes
cell type
spermatids
chip-antibody
none

Sequenced DNA Library

library_name
GSM740676: Input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
21464387
Reads aligned (%)
91.2
Duplicates removed (%)
15.1
Number of peaks
169 (qval < 1E-05)

mm9

Number of total reads
21464387
Reads aligned (%)
91.1
Duplicates removed (%)
15.1
Number of peaks
136 (qval < 1E-05)

Base call quality data from DBCLS SRA