SRX070883
GSM732905: CUTLL-RBPJ-1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RBPJ

Cell type

Cell type Class
Blood
Cell type
CUTLL1
NA
NA

Attributes by original data submitter

Sample

source_name
CUTLL1: RBPJ Chromatin IP
cell line
CUTLL1
disease
T lymphoblastic leukemia/lymphoma
cell type
T lymphocyte
antibody
Rabbit anti RBPJ

Sequenced DNA Library

library_name
GSM732905: CUTLL-RBPJ-1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25659096
Reads aligned (%)
94.4
Duplicates removed (%)
2.5
Number of peaks
2613 (qval < 1E-05)

hg19

Number of total reads
25659096
Reads aligned (%)
93.5
Duplicates removed (%)
3.9
Number of peaks
2460 (qval < 1E-05)

Base call quality data from DBCLS SRA