SRX070879
GSM730704: cFOS ChIP-seq B

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOS

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Chromatin IP against cFOS
cell-type
umbilical vein endothelial cells
passage
07/06/2010

Sequenced DNA Library

library_name
GSM730704: cFOS_ChIP-seq_B
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
39973835
Reads aligned (%)
97.1
Duplicates removed (%)
20.9
Number of peaks
42274 (qval < 1E-05)

hg19

Number of total reads
39973835
Reads aligned (%)
96.5
Duplicates removed (%)
22.0
Number of peaks
42882 (qval < 1E-05)

Base call quality data from DBCLS SRA