Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
HPdLF
Tissue
epithelium
Description
periodontal ligament fibroblasts

Attributes by original data submitter

Sample

source_name
HPdLF
biomaterial_provider
Lonza
cell
HPdLF
cell organism
Human
cell description
Normal Human Periodontal Ligament Fibroblasts
cell sex
M
replicate
1

Sequenced DNA Library

library_name
GSM736632: Stam_HPdLF_1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
31314927
Reads aligned (%)
98.0
Duplicates removed (%)
33.3
Number of peaks
102067 (qval < 1E-05)

hg19

Number of total reads
31314927
Reads aligned (%)
97.2
Duplicates removed (%)
35.5
Number of peaks
102046 (qval < 1E-05)

Base call quality data from DBCLS SRA