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For hg38
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: K-562
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX069222
GSM736629: Stam K562 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous
Attributes by original data submitter
Sample
source_name
K562
biomaterial_provider
ATCC
cell
K562
cell organism
Human
cell description
leukemia
cell karyotype
cancer
cell lineage
"The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell sex
F
replicate
1
Sequenced DNA Library
library_name
GSM736629: Stam_K562_1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
58028122
Reads aligned (%)
55.9
Duplicates removed (%)
46.0
Number of peaks
50355 (qval < 1E-05)
hg19
Number of total reads
58028122
Reads aligned (%)
55.4
Duplicates removed (%)
47.4
Number of peaks
50142 (qval < 1E-05)
Base call quality data from
DBCLS SRA