Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

biomaterial_type

immortalized cell line

line

GM12878

cell organism

Human

cell description

lymphoblastoid

cell karyotype

relatively normal

cell lineage

International HapMap Project - CEPH/Utah - European Caucasion; Epstein-Barr Virus

cell sex

F

replicate

2

Sequenced DNA Library

library_name

GSM736620: Stam_GM12878_2

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

175128655

Reads aligned (%)

38.9

Duplicates removed (%)

39.0

Number of peaks

56287 (qval < 1E-05)

hg19

Number of total reads

175128655

Reads aligned (%)

28.1

Duplicates removed (%)

19.5

Number of peaks

57529 (qval < 1E-05)