SRX069199
GSM736606: Stam HAEpiC 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
HAEpiC
Tissue
epithelium
Description
amniotic epithelial cells

Attributes by original data submitter

Sample

source_name
HAEpiC
biomaterial_provider
ScienCell
cell
HAEpiC
cell organism
Human
cell description
Human Amniotic Epithelial Cells
cell sex
U
replicate
2

Sequenced DNA Library

library_name
GSM736606: Stam_HAEpiC_2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44795727
Reads aligned (%)
93.1
Duplicates removed (%)
48.3
Number of peaks
129709 (qval < 1E-05)

hg19

Number of total reads
44795727
Reads aligned (%)
92.7
Duplicates removed (%)
49.2
Number of peaks
129505 (qval < 1E-05)

Base call quality data from DBCLS SRA