SRX069188
GSM736595: Stam HL-60 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
HL-60
biomaterial_provider
ATCC
cell
HL-60
cell organism
Human
cell description
Human promyelocytic leukemia cells. (PMID: 276884)
cell karyotype
cancer
cell sex
F
replicate
2

Sequenced DNA Library

library_name
GSM736595: Stam_HL-60_2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43587783
Reads aligned (%)
91.4
Duplicates removed (%)
28.1
Number of peaks
61314 (qval < 1E-05)

hg19

Number of total reads
43587783
Reads aligned (%)
90.5
Duplicates removed (%)
29.7
Number of peaks
61192 (qval < 1E-05)

Base call quality data from DBCLS SRA