Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
HIPEpiC
Tissue
epithelium
Lineage
ectoderm
Description
iris pigment epithelial cells

Attributes by original data submitter

Sample

source_name
HIPEpiC
biomaterial_provider
ScienCell
cell
HIPEpiC
cell organism
Human
cell description
Human Iris Pigment Epithelial Cells
cell lineage
ectoderm
cell sex
U
replicate
1

Sequenced DNA Library

library_name
GSM736589: Stam_HIPEpiC_1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
9685433
Reads aligned (%)
94.0
Duplicates removed (%)
29.7
Number of peaks
40464 (qval < 1E-05)

hg19

Number of total reads
9685433
Reads aligned (%)
93.4
Duplicates removed (%)
30.7
Number of peaks
40491 (qval < 1E-05)

Base call quality data from DBCLS SRA