Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
HGF
Tissue
gingiva
Description
gingival fibroblasts

Attributes by original data submitter

Sample

source_name
HGF
biomaterial_provider
ScienCell
cell
HGF
cell organism
Human
cell description
Human Gingival Fibroblasts
cell karyotype
normal
cell sex
U
replicate
1

Sequenced DNA Library

library_name
GSM736579: Stam_HGF_1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
39172712
Reads aligned (%)
94.3
Duplicates removed (%)
20.6
Number of peaks
81263 (qval < 1E-05)

hg19

Number of total reads
39172712
Reads aligned (%)
93.6
Duplicates removed (%)
22.0
Number of peaks
81198 (qval < 1E-05)

Base call quality data from DBCLS SRA