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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: HGF
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX069169
GSM736576: Stam HGF 2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Others
Cell type
HGF
Tissue
gingiva
Description
gingival fibroblasts
Attributes by original data submitter
Sample
source_name
HGF
biomaterial_provider
ScienCell
cell
HGF
cell organism
Human
cell description
Human Gingival Fibroblasts
cell karyotype
normal
cell sex
U
replicate
2
Sequenced DNA Library
library_name
GSM736576: Stam_HGF_2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
32101943
Reads aligned (%)
94.9
Duplicates removed (%)
24.8
Number of peaks
76583 (qval < 1E-05)
hg19
Number of total reads
32101943
Reads aligned (%)
94.2
Duplicates removed (%)
26.3
Number of peaks
76116 (qval < 1E-05)
Base call quality data from
DBCLS SRA