Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
HGF
Tissue
gingiva
Description
gingival fibroblasts

Attributes by original data submitter

Sample

source_name
HGF
biomaterial_provider
ScienCell
cell
HGF
cell organism
Human
cell description
Human Gingival Fibroblasts
cell karyotype
normal
cell sex
U
replicate
2

Sequenced DNA Library

library_name
GSM736576: Stam_HGF_2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
32101943
Reads aligned (%)
94.9
Duplicates removed (%)
24.8
Number of peaks
76583 (qval < 1E-05)

hg19

Number of total reads
32101943
Reads aligned (%)
94.2
Duplicates removed (%)
26.3
Number of peaks
76116 (qval < 1E-05)

Base call quality data from DBCLS SRA