Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Neural
Cell type
SK-N-MC
Primary Tissue
Brain
Site of Extraction
Brain
Tissue Diagnosis
neuroepithelioma

Attributes by original data submitter

Sample

source_name
SK-N-MC
biomaterial_provider
ATCC
cell
SK-N-MC
cell organism
Human
cell description
neuroepithelioma cell line derived from a metastatic supra-orbital human brain tumor, "SK-N-MC was isolated in September of l971 and was found to have moderate dopamine - beta - hydroxylase activity as well as formaldehyde induced fluorescence indicative of intracellular catecholamines." - ATCC. (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
replicate
2

Sequenced DNA Library

library_name
GSM736570: Stam_SK-N-MC_2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
6261671
Reads aligned (%)
97.5
Duplicates removed (%)
12.0
Number of peaks
11629 (qval < 1E-05)

hg19

Number of total reads
6261671
Reads aligned (%)
96.7
Duplicates removed (%)
13.7
Number of peaks
11765 (qval < 1E-05)

Base call quality data from DBCLS SRA