SRX069162
GSM736569: Stam HCPEpiC 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Neural
Cell type
HCPEpiC
Tissue
epithelium
Lineage
ectoderm
Description
choroid plexus epithelial cells

Attributes by original data submitter

Sample

source_name
HCPEpiC
biomaterial_provider
ScienCell
cell
HCPEpiC
cell organism
Human
cell description
Human Choroid Plexus Epithelial Cells
cell sex
U
replicate
1

Sequenced DNA Library

library_name
GSM736569: Stam_HCPEpiC_1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31378989
Reads aligned (%)
97.1
Duplicates removed (%)
30.8
Number of peaks
134840 (qval < 1E-05)

hg19

Number of total reads
31378989
Reads aligned (%)
96.6
Duplicates removed (%)
32.0
Number of peaks
134407 (qval < 1E-05)

Base call quality data from DBCLS SRA