Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP
biomaterial_provider
ATCC
cell
LNCaP
cell organism
Human
cell description
prostate adenocarcinoma, "LNCaP clone FGC was isolated in 1977 by J.S. Horoszewicz, et al., from a needle aspiration biopsy of the left supraclavicular lymph node of a 50-year-old Caucasian male (blood type B+) with confirmed diagnosis of metastatic prostate carcinoma." - ATCC. (Horoszewicz et al. LNCaP Model of Human Prostatic Carcinoma. Cancer Research 43, 1809-1818, April 1983.)
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
replicate
1

Sequenced DNA Library

library_name
GSM736565: Stam_LNCaP_1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
33810518
Reads aligned (%)
98.4
Duplicates removed (%)
58.3
Number of peaks
81089 (qval < 1E-05)

hg19

Number of total reads
33810518
Reads aligned (%)
97.8
Duplicates removed (%)
59.8
Number of peaks
80988 (qval < 1E-05)

Base call quality data from DBCLS SRA