SRX069143
GSM736550: Stam HNPCEpiC 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
HNPCEpiC
Tissue
epithelium
Description
non-pigment ciliary epithelial cells

Attributes by original data submitter

Sample

source_name
HNPCEpiC
biomaterial_provider
ScienCell
cell
HNPCEpiC
cell organism
Human
cell description
Human Non-Pigment Ciliary Epithelial Cells
cell sex
U
replicate
2

Sequenced DNA Library

library_name
GSM736550: Stam_HNPCEpiC_2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
39772483
Reads aligned (%)
96.6
Duplicates removed (%)
40.6
Number of peaks
83876 (qval < 1E-05)

hg19

Number of total reads
39772483
Reads aligned (%)
96.1
Duplicates removed (%)
41.6
Number of peaks
83409 (qval < 1E-05)

Base call quality data from DBCLS SRA