SRX069140
GSM736547: Stam HConF 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
HConF
Tissue
eye
Lineage
ectoderm
Description
conjunctival fibroblast

Attributes by original data submitter

Sample

source_name
HConF
biomaterial_provider
ScienCell
cell
HConF
cell organism
Human
cell description
Human Conjunctival Fibroblast
cell sex
U
replicate
1

Sequenced DNA Library

library_name
GSM736547: Stam_HConF_1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
47172573
Reads aligned (%)
94.9
Duplicates removed (%)
30.4
Number of peaks
84556 (qval < 1E-05)

hg19

Number of total reads
47172573
Reads aligned (%)
94.5
Duplicates removed (%)
31.4
Number of peaks
87602 (qval < 1E-05)

Base call quality data from DBCLS SRA