SRX069132
GSM736539: Stam RPTEC 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
RPTEC
Tissue
epithelium
Description
renal proximal tubule epithelial cells

Attributes by original data submitter

Sample

source_name
RPTEC
biomaterial_provider
Lonza
cell
RPTEC
cell organism
Human
cell description
Renal Proximal Tubule Epithelial Cells
cell sex
U
replicate
2

Sequenced DNA Library

library_name
GSM736539: Stam_RPTEC_2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26292710
Reads aligned (%)
94.7
Duplicates removed (%)
35.9
Number of peaks
58025 (qval < 1E-05)

hg19

Number of total reads
26292710
Reads aligned (%)
94.0
Duplicates removed (%)
37.5
Number of peaks
57824 (qval < 1E-05)

Base call quality data from DBCLS SRA