SRX069131
GSM736538: Stam HAc 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Neural
Cell type
HAc
Tissue
cerebellar
Lineage
ectoderm
Description
astrocytes-cerebellar

Attributes by original data submitter

Sample

source_name
HAc
biomaterial_provider
ScienCell
cell
HAc
cell organism
human
cell description
Human Astrocytes-cerebellar
cell karyotype
Normal
cell lineage
Astrocytic
cell sex
U
replicate
2

Sequenced DNA Library

library_name
GSM736538: Stam_HAc_2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25300074
Reads aligned (%)
96.8
Duplicates removed (%)
26.1
Number of peaks
56664 (qval < 1E-05)

hg19

Number of total reads
25300074
Reads aligned (%)
96.2
Duplicates removed (%)
27.1
Number of peaks
56483 (qval < 1E-05)

Base call quality data from DBCLS SRA