Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HUVEC
biomaterial_provider
Lonza
cell
HUVEC
cell organism
Human
cell description
Human Umbilical Vein Endothelial Cell
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
replicate
2

Sequenced DNA Library

library_name
GSM736533: Stam_HUVEC_2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
15986284
Reads aligned (%)
97.0
Duplicates removed (%)
16.4
Number of peaks
33740 (qval < 1E-05)

hg19

Number of total reads
15986284
Reads aligned (%)
96.2
Duplicates removed (%)
17.9
Number of peaks
34245 (qval < 1E-05)

Base call quality data from DBCLS SRA