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For hg38
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BigWig
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: AG09319
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX069124
GSM736531: Stam AG09319 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Others
Cell type
AG09319
Tissue
gingival
Description
gum tissue fibroblasts from apparently heathly 24 year old
Attributes by original data submitter
Sample
source_name
AG09319
biomaterial_provider
AG09319
cell
AG09319
cell organism
Human
cell description
Adult human gum tissue fibroblasts
cell lineage
mesoderm
cell sex
F
replicate
1
Sequenced DNA Library
library_name
GSM736531: Stam_AG09319_1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
39006236
Reads aligned (%)
93.8
Duplicates removed (%)
53.0
Number of peaks
84828 (qval < 1E-05)
hg19
Number of total reads
39006236
Reads aligned (%)
93.2
Duplicates removed (%)
54.1
Number of peaks
84595 (qval < 1E-05)
Base call quality data from
DBCLS SRA