Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
AG09319
Tissue
gingival
Description
gum tissue fibroblasts from apparently heathly 24 year old

Attributes by original data submitter

Sample

source_name
AG09319
biomaterial_provider
AG09319
cell
AG09319
cell organism
Human
cell description
Adult human gum tissue fibroblasts
cell lineage
mesoderm
cell sex
F
replicate
1

Sequenced DNA Library

library_name
GSM736531: Stam_AG09319_1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
39006236
Reads aligned (%)
93.8
Duplicates removed (%)
53.0
Number of peaks
84828 (qval < 1E-05)

hg19

Number of total reads
39006236
Reads aligned (%)
93.2
Duplicates removed (%)
54.1
Number of peaks
84595 (qval < 1E-05)

Base call quality data from DBCLS SRA